polyfreqs: an R package for Bayesian population genomics in autopolyploids
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Updated
Dec 16, 2016 - R
polyfreqs: an R package for Bayesian population genomics in autopolyploids
CGPS implementation of Genotyphi for assembled genomes.
Predict height by gender and genotypes using machine learning.
Stefan's imputation accuracy package
Pipeline with lots of user input for processing SNP data towards ADMIXTURE and/or imputation
Analysis of genotype data from 23andMe DNA testing.
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
summarize and visualize the genotypes categories per sample in a VCF file
Perl software to cluster SNPs based on its genotype.
CRISPR short indel genotype analyser for sequences, which have unique indices per well
Codes i wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"
Support Vector Structural Variation Genotyper
Subsample a VCF file in order to fix the minor allele frequency across SNPs
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