Materials and presentation for the 2022 ISB Microbiome course.
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Oct 17, 2023 - Jupyter Notebook
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16s-seq
Here are 13 public repositories matching this topic...
Materials and presentation for the 2023 ISB Microbiome course.
analysis
systems-biology
sequencing
microbiome
hacktoberfest
metabolic-models
microbial-ecology
qiime2
pathogens
16s-seq
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Jan 26, 2024 - Jupyter Notebook
Quantitative metagenomic alignment and taxonomic exact-matching
bioinformatics
metagenomics
microbiome
its-sequence
shotgun-metagenomics
16s-seq
exact-matching
reduced-representation-sequencing
strain-level-profiling
compositional-correlation
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May 15, 2024 - Shell
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
bioinformatics
help-wanted
rna
bacteria
phylogeny
phycology
rrna
rna-folding
cyanobacteria
16s-rrna
23s
16s-seq
rnafolding
16s-23s
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Jan 12, 2023 - Python
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
pipeline
metagenomics
illumina
16s
microbiota
illumina-sequencing
phyloseq
microbial-ecology
dada2
16s-seq
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May 31, 2024 - R
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
visualization
analysis
metagenomics
data-analysis
microbiome
omics
16s
metagenomes
metagenomic-analysis
microbiome-analysis
omics-data-integration
microbiome-data
16s-rrna
microbiome-workflow
metagenomic-pipeline
omics-data
microbiome-analysis-pipelines
16s-seq
omics-data-analysis
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May 17, 2024
Repository containing various RNA-seq, ChIP-seq, and 16S-seq analysis pipelines run through R
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Jul 6, 2021 - R
Python script designed to streamline bioinformatics analysis and facilitate data extraction from EZBioCloud
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Mar 16, 2024 - Python
Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"
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Feb 22, 2023 - R
A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia
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Jan 29, 2023 - R
AU microbiome molecular exploratory analyses for NSW
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Jul 14, 2022 - R
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