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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

Pinned

  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 3

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 6 2

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 226 repositories
  • variantEffectPredictor Public

    Variant Effect Predictor Workflow

    WDL 3 1 1 1 Updated Jun 6, 2024
  • mutect2ConsensusTumorOnly Public

    The Mutect2Consensus workflow with only tumor inputs

    WDL 0 0 0 1 Updated Jun 6, 2024
  • dimsum Public

    QC Tracking dashboard

    Java 1 0 0 0 Updated Jun 6, 2024
  • cardea Public

    Case data API

    Java 0 Apache-2.0 0 0 0 Updated Jun 6, 2024
  • mutect2Consensus Public

    The Mutect2Consensus workflow will process umiConsensus outputs for the tumour data through mutect2 in tumour only mode to call variants then use information from the matched normal to identify likely germline variants.

    WDL 0 0 0 1 Updated Jun 5, 2024
  • vidarr Public

    Analysis provenance tracking server

    Java 1 MIT 1 0 0 Updated Jun 5, 2024
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 6 GPL-3.0 2 3 1 Updated Jun 4, 2024
  • smallBamQc Public

    Generate BAM file metrics for OICR's QC Gates as fast as possible

    WDL 0 0 0 0 Updated Jun 3, 2024
  • shesmu Public

    Decision-driven action launching system

    Java 8 MIT 3 0 3 Updated May 31, 2024
  • data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python 0 MIT 0 0 0 Updated May 30, 2024
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