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31 followers · 46 following
  • Greensboro, NC

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Achievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Shark
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Pinned

  1. VCF-Simplify VCF-Simplify Public

    A python parser to simplify and build the VCF (Variant Call Format).

    Python 45 12

  2. phase-extender phase-extender Public

    A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.

    Jupyter Notebook 13 4

  3. phase-stitcher phase-stitcher Public

    a python program to stitch the ReadBack phased haplotypes in F1 hybrids.

    Jupyter Notebook 6 3

  4. ASE-CADG ASE-CADG Public

    Pipeline for ASE (allele specific expression) using competitive alignment to diploid genome

    HTML 3

  5. SmallTools SmallTools Public

    Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.

    Python 2

  6. TestSwitchErrors TestSwitchErrors Public

    This is a tutorial that shows how phaseExtender can be used for recursive improvement of haplotype phasing and how to test the phasing quality by measuring switcherrors.

    Jupyter Notebook 2