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@cmmr

Alkek Center for Metagenomics and Microbiome Research

CMMR researchers develop molecular and informatic tools to advance clinical microbiome research.

Pinned

  1. virmap virmap Public

    Perl 24 14

  2. rbiom rbiom Public

    Interact with Biological Observation Matrix files.

    R 9

  3. EsViritu EsViritu Public

    Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

    Shell 14 1

  4. Marker-MAGu Marker-MAGu Public

    Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes

    Python 4

Repositories

Showing 10 of 10 repositories
  • rbiom Public

    Interact with Biological Observation Matrix files.

    R 9 AGPL-3.0 0 3 0 Updated May 17, 2024
  • fillpattern Public

    Patterned Fills for 'ggplot2' and 'grid' Graphics

    R 4 0 0 0 Updated Mar 10, 2024
  • TX_wastewater_virome Public
    HTML 4 0 1 0 Updated Mar 7, 2024
  • EsViritu Public

    Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

    Shell 14 MIT 1 5 0 Updated Nov 27, 2023
  • Marker-MAGu Public

    Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes

    Python 4 MIT 0 2 0 Updated Oct 17, 2023
  • aesInput Public

    Choose colors, shapes, or patterns for each selectize option in Shiny.

    JavaScript 0 AGPL-3.0 0 0 0 Updated Sep 30, 2021
  • virmap Public
    Perl 24 AGPL-3.0 14 17 0 Updated Feb 2, 2021
  • covid Public archive

    COVID-19 Dashboard coded in Shiny R

    R 0 AGPL-3.0 1 0 0 Updated Jun 26, 2020
  • puma-deprecated Public archive

    Code for the unreleased/unpublished PUMA pipeline.

    Perl 0 GPL-3.0 0 0 0 Updated Jan 7, 2020
  • NashMicrobiome2017 Public archive

    Pipeline for Fungal Community Analysis

    Perl 0 GPL-3.0 0 0 0 Updated Jul 19, 2017

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