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CCDM Bioinformatics

9 followers
https://ccdmb.github.io

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BioDendro BioDendro Public

A package to cluster and visualise MS/MS spectral data

Jupyter Notebook 10
catastrophy catastrophy Public

CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

Python 5
predector predector Public

Effector prediction pipeline based on protein properties.

Shell 10 7

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Showing 10 of 26 repositories

LR-toolkit Public
🌱 Toolkit for long reads RNAseq data analysis

Nextflow 1 0 3 0 Updated Jan 17, 2024
qcflow-rnaseq Public
✅ 🚨 QC and alignement pipeline for RNA-seq reads

Nextflow 0 Apache-2.0 0 0 0 Updated Jan 16, 2024
ccdmb.github.io Public
Front page for the CCDM bioinformatics group.

0 Apache-2.0 0 0 0 Updated Nov 13, 2023
predector-utils Public
Utilities for running the predector pipeline.

Python 0 Apache-2.0 0 2 0 Updated Jun 14, 2023
predector Public
Effector prediction pipeline based on protein properties.

Shell 10 Apache-2.0 7 10 (1 issue needs help) 0 Updated Jun 13, 2023
nanopore_assembly Public

Nextflow 0 0 0 0 Updated May 10, 2023
barley-DH-pow-rnaseq Public
RNA-seq analysis of barley double haploid (DH) lines from Baudin / Eth069 cross during powdery mildew disease

0 MIT 0 0 0 Updated May 2, 2023
R_Script_templates Public
Example templates for bioinformatics analyses

HTML 0 0 0 0 Updated Apr 18, 2023
catastrophy Public
CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

Python 5 BSD-3-Clause 0 2 0 Updated Jan 16, 2023
wheat-agr-tanspot Public
RNA-seq analysis of wheat AGR during tan spot infection

0 MIT 0 0 0 Updated Dec 9, 2022

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