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@biomedbigdata

Big Data in Biomedicine

The Research Group on Big Data in Biomedicine is headed by Dr. Markus List at the Chair of Experimental Bioinformatics

Popular repositories

  1. OpenLabFramework OpenLabFramework Public

    A open source framework for research data management. DEMO at https://dockerhts.compbio.sdu.dk/OpenLabFramework/login/auth

    JavaScript 20 6

  2. data-leakage-ppi-prediction data-leakage-ppi-prediction Public

    Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'

    C++ 13 1

  3. TF-Prioritizer TF-Prioritizer Public

    Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data

    Java 12

  4. SPONGE SPONGE Public

    Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference

    R 10 8

  5. BiCoN BiCoN Public

    Network Constrained Biclustering PyPI package

    Python 10 2

  6. epigen epigen Public

    EpiGEN: an epistasis simulation pipeline

    Python 8 4

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