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Pinned

  1. VIcaller VIcaller Public

    A software to detect virome-wide integrations

    Perl 14 5

  2. ERVcaller ERVcaller Public

    ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposable elements (TEs) in the human genome using next-generation s…

    Perl 13 4

  3. VRscreen VRscreen Public

    This pipeline can be used to detect uniquely mapped paired-end viral reads

    Perl 1

  4. VariabilityInTEs VariabilityInTEs Public

    R 2 3

  5. TE-MPRA-and-phylogenetic-analysis TE-MPRA-and-phylogenetic-analysis Public

    R 1

  6. RFAPtools RFAPtools Public

    We developed a bioinformatics pipeline termed RFAPtools to unambiguously discriminate between SNPs versus differences of homoeologous sequences in polyploid crops such as oilseed rape without a ref…

    Perl 1 1