Hosts several Nextflow pipelines used by Sanger hgi team, the largest one is

Nextflow-RNAseq

A bioinformatics pipeline used for RNA sequencing data, written in the new nextflow DSL2 language syntax, leveraging nextflow modules.
DSL2 documentation: https://www.nextflow.io/docs/edge/dsl2.html

Credits

• The original pipeline was forked from the amazing nf-core/rnaseq pipeline, originally developed at the National Genomics Infrastructure at SciLifeLab in Stockholm, Sweden by Phil Ewels (@ewels) and Rickard Hammarén (@Hammarn).
• this DSL2 rewrite is based on the cellgeni/rnaseq fork (from the Cellular Genetics program at the Wellcome Sanger Institute).