Farmers report

Usage

To use within Sanger just load SoftPack environment and start RStudio

module load HGI/softpack/groups/hgi/farmers-report
module load HGI/common/rstudio
rstudio start -M 8000

You can now knit report or serve an app.

Development

To run tests simply execute within an environment

Rscript tests/testthat.R

To calculate the coverage

Rscript tests/covr.R

The coverage reports can be found in reports/ directory.