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include additional arguments to manage colours, linetype and alpha of arrows #24

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sry for the unnecessary corrections, did originally not plan to share this.

vqv and others added 12 commits August 1, 2014 09:33
Fixed a bug in the ellipse drawing.  The ellipse represents a contour of a bivariate Normal distribution with the same covariance matrix as the sample covariance matrix of the plotted principal components.  When the number of observations is <= 2, the ellipse will not display because the sample covariance matrix will be degenerate.  

There was a bug in the conditional to check the number of observations that caused the off-diagonals to be ignored.  This has been fixed.
Just guessing that this is what you meant ;)
original version yields a warning from devtools():

```
Warning message:
Username parameter is deprecated. Please use vqv/ggbiplot 
```
update install instructions
Use an Rmd README to automatically generate an example plot
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