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  1. hPSC_epigenetic_dynamics hPSC_epigenetic_dynamics Public

    Epigenetic dynamics during capacitation of naïve human pluripotent stem cells

    R 1

  2. H3K18la H3K18la Public

    H3K18 lactylation marks tissue-specific active enhancers

    R 2

  3. AT_memory AT_memory Public

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  4. nf_methylseq nf_methylseq Public

    A Nextflow pipeline to align and quantify Methylation (Bisulfite) sequencing data.

    Nextflow

  5. nf_qc nf_qc Public

    A Nextflow pipeline to perform quality control of sequencing data.

    Nextflow

  6. nf_rnaseq nf_rnaseq Public

    A Nextflow pipeline to perform quality control, alignment, and quantification of RNA sequencing data.

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Repositories

Showing 7 of 7 repositories
  • nf_fetchgeo Public

    A Nextflow pipeline to download FASTQ, SRA, and processed files from the Gene Expression Omnibus (GEO) database, a public functional genomics data repository supporting MIAME-compliant data submissions.

    Nextflow 0 0 0 0 Updated Nov 5, 2023
  • nf_methylseq Public

    A Nextflow pipeline to align and quantify Methylation (Bisulfite) sequencing data.

    Nextflow 0 0 0 0 Updated Oct 18, 2023
  • nf_qc Public

    A Nextflow pipeline to perform quality control of sequencing data.

    Nextflow 0 0 0 0 Updated Oct 18, 2023
  • nf_rnaseq Public

    A Nextflow pipeline to perform quality control, alignment, and quantification of RNA sequencing data.

    Nextflow 0 0 0 0 Updated Oct 18, 2023
  • H3K18la Public

    H3K18 lactylation marks tissue-specific active enhancers

    R 0 GPL-3.0 2 0 0 Updated Jul 27, 2023
  • R 0 GPL-3.0 0 0 0 Updated Jul 27, 2023
  • hPSC_epigenetic_dynamics Public

    Epigenetic dynamics during capacitation of naïve human pluripotent stem cells

    R 1 0 0 0 Updated Jun 8, 2023

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