Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

BigWig support for genomicProfiles view #1518

Draft
wants to merge 3 commits into
base: main
Choose a base branch
from

Conversation

keller-mark
Copy link
Member

@keller-mark keller-mark commented May 2, 2023

Fixes #1431

Background

TODO

  • make PR for changes in https://github.com/keller-mark/higlass-bigwig-datafetcher back into higlass/higlass-bigwig-datafetcher, then use new version of higlass/higlass-bigwig-datafetcher here
  • add Vitessce fileType to reflect this
  • add bigwig to docs as a supported fileType
  • implement FileType.GENOMIC_PROFILES_ZARR as a joint file type (mapping each multivec "row" to an atomic file type to match the bigwig case)

Change List

Checklist

  • Ensure PR works with all demos on the dev.vitessce.io homepage
  • Open (draft) PR's into vitessce-python and vitessce-r if this is a release PR
  • Documentation added or updated

@keller-mark keller-mark changed the title WIP: higlass bigwig datafetcher support BigWig support for genomicProfiles view Jun 5, 2023
@github-actions
Copy link
Contributor

github-actions bot commented Jun 5, 2023

Size Change: +453 kB (+2%)

Total Size: 19.4 MB

Filename Size Change
./packages/main/prod/dist/index-********.js 7.13 MB +265 kB (+4%)
./packages/main/prod/dist/index.min.umd.cjs 7.78 MB +188 kB (+2%)
ℹ️ View Unchanged
Filename Size
./packages/main/prod/dist/deflate-********.js 243 B
./packages/main/prod/dist/hglib-********.js 4.34 MB
./packages/main/prod/dist/index.min.js 590 B
./packages/main/prod/dist/jpeg-********.js 15.3 kB
./packages/main/prod/dist/lerc-********.js 47.2 kB
./packages/main/prod/dist/lzw-********.js 2.1 kB
./packages/main/prod/dist/packbits-********.js 576 B
./packages/main/prod/dist/pako.esm-********.js 68.6 kB
./packages/main/prod/dist/raw-********.js 168 B
./packages/main/prod/dist/webimage-********.js 872 B

compressed-size-action

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

BigWig file type for genomic profiles data type
1 participant