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Viash 0.8.6

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@Grifs Grifs released this 26 Apr 11:46
0.8.6
4d7479f
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Viash 0.8.6 (2024-04-26): Bug fixes and improvements for CI

Fix some issues in some edge cases.
Add options for testing in a CI environment. Given that these options are not meant for general use, they are hidden from the help message.
Some improvements are made to run in Nextflow Fusion.

DOCUMENTATION

  • docker setup strategy: Fix inconsistencies in the documentation (PR #657).

  • repositories: Fix uri -> repo in the repositories documentation (PR #682).

NEW FUNCTIONALITY

  • viash test and viash ns test: Add a hidden --dry_run option to build the tests without executing them (PR #676).

  • viash test and viash ns test: Add a hidden --deterministic_working directory argument to use a fixed directory path (PR #683).

  • component names: Verify that component namespace and name combinations are unique (PR #685).

BUG FIXES

  • NextflowPlatform: Fix publishing state for output arguments with multiple: true (#638, PR #639).

  • Executable: Check whether a multiple output file argument contains a wildcard (PR #639).

  • NextflowPlatform: Fix a possible cause of concurrency issues (PR #669).

  • Resources: Fix an issue where if the first resource is not a script, the resource is silently dropped (PR #670).

  • Docker automount: Prevent adding a trailing slash to an automounted folder (PR #673).

  • NextflowPlatform: Change the at-runtime generated nextflow process from an in-memory to an on-disk temporary file, which should cause less issues with Nextflow Fusion (PR #681).

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