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Support for CSI indexing for large genomes #3864

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brettChapman opened this issue Feb 22, 2023 · 1 comment
Open

Support for CSI indexing for large genomes #3864

brettChapman opened this issue Feb 22, 2023 · 1 comment

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@brettChapman
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Hi

I'm using vg version v1.40.0 "Suardi".

I'm trying to run vg construct to embed variants into the graph, but it appears that TBI indexing is only used and not CSI. My genome can not be indexed using TBI because it's a large plant genome.

Thanks.
@glennhickey
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For reference, this was also brought up in vcflib/vcflib#367 by way of #3686.

@glennhickey glennhickey mentioned this issue Dec 15, 2023
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@glennhickey @brettChapman