Skip to content

Issues: vgteam/vg

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

782 Open 1,204 Closed
782 Open 1,204 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Running VG deconstruct failed in the gfa generated from PGGB pipline
#4291 opened May 8, 2024 by isaamael
Merging multiple graph files
#4289 opened May 7, 2024 by Lucio-Yang
3
Can VG simulate the third-generations long reads?
#4284 opened May 6, 2024 by tanger-code
1
Augmentation failed on one chromosome, but succesfull on other chromosomes
#4283 opened May 6, 2024 by mas-agis
3
Genotyping SVs in a minigraph-cactus graph yields many similar alleles in output vcf
#4281 opened May 6, 2024 by henrivkgt
1
VCF file empty when calling SV on ONT data
#4279 opened Apr 29, 2024 by SwenDiepstraten
9
vg pack error
#4278 opened Apr 26, 2024 by QiaoYJYJ
3
Autoindex should parse tabix-indexed monolithic VCFs in parallel
#4277 opened Apr 25, 2024 by jeizenga
Mapping paired end reads with vg giraffe: "Falling back on single-end mapping"
#4276 opened Apr 25, 2024 by evcurran
9
vg alignments not reporting split reads
#4275 opened Apr 25, 2024 by TammushB
1
Program stuck at [IndexRegistry]: Chunking VCF(s) for days
#4274 opened Apr 25, 2024 by Jokendo-collab
2
a problem about vg autoidex (v1.56.0)
#4271 opened Apr 19, 2024 by dongdongdong0203
1
Hello, I want to get some information from Snarl file
#4270 opened Apr 15, 2024 by pioneer-pi
Release vg v1.57.0
#4266 opened Apr 8, 2024 by adamnovak
24 tasks
v1.57.0
ERROR: Tag "transcript_id" not found in attributes (line 145).
#4264 opened Apr 8, 2024 by 08li20
3
Variant Calling from HPRC Pangenome
#4263 opened Apr 3, 2024 by bipinbalan
3
I have a question while using vg.
#4261 opened Apr 3, 2024 by pioneer-pi
6
Some questions about the <vg call> commond output
#4259 opened Mar 30, 2024 by Kled111
7
Issue with VCF generated after running vg haplotypes
#4258 opened Mar 28, 2024 by eblerjana
2
How should I regenotype VCFs using vg?
#4253 opened Mar 25, 2024 by rickymagner
2
position X+Y is not inside node X
#4250 opened Mar 19, 2024 by Kled111
1
Negative end of path positions in vg giraffe mapping
#4249 opened Mar 18, 2024 by iamdeaardappel
1
vg giraffe - Signal 6 occurred. VG has crashed
#4246 opened Mar 15, 2024 by jdamas13
1
vg construct will let you create a graph without reference paths, with different path names than Cactus
#4239 opened Mar 5, 2024 by adamnovak
Can vg construct a trans-chromosomal graph ?
#4237 opened Mar 4, 2024 by dudududu12138
5
ProTip! Exclude everything labeled bug with -label:bug.