This is the reference environment for the manuscript "Analysing and simulating energy-based models in biology using BondGraphTools". It executes code to reproduce specific results described in the manuscript.
To find other versions of this reference environment, see Other Links below.
This version of the reference environment is a virtual machine managed by Vagrant. To use it, install Vagrant, VirtualBox and Git, then do:
$ git clone https://github.com/uomsystemsbiology/BGT-Biology-VRE.git
$ cd BGT-Biology-VRE
$ vagrant up
$ vagrant reload
This will start a virtual machine with scripts to run which reproduce results described in the manuscript.