Centre for Computational Inference in Evolutionary Life Science
Popular repositories
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genomicgraphcoords
genomicgraphcoords PublicOnline material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
Python 11
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OffsetBasedGraph
OffsetBasedGraph PublicPython package for handling genomic offset-based graphs
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Solbakken_RNAseq
Solbakken_RNAseq PublicData related to Solbakken et al 2019, infection and vaccination of Atlantic cod
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Repositories
- Nilsson_innate_and_adaptive Public
Repository for Nilsson et al.: The genome of the great gerbil reveals species-specific duplication of an MHCII gene
- teleost-repeats Public
Repo for "Genomic repeat landscape evolution across the teleost fish lineages" (Reinar et al. 2019)
- Solbakken_RNAseq Public
Data related to Solbakken et al 2019, infection and vaccination of Atlantic cod
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- Solbakken_TLRs Public
Repository for Solbakken et al: Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions (Scientific reports)
- TandemRepeats Public
- genomicgraphcoords Public
Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
- gendatafetcher Public
A small set of utility functions for using the UCSC mysql database and sequence API, focused around getting data relevant for graph-based genomes.
