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Centre for Bioinformatics, University of Oslo

The hub of bioinformatics and computational biology at the University of Oslo

23 followers
Oslo, Norway
https://www.mn.uio.no/sbi/english/
@unioslo_bioinfo

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immuneML immuneML Public

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

Python 56 28
compairr compairr Public

Comparison of Adaptive Immune Receptor Repertoires

C++ 24 4
graph_peak_caller graph_peak_caller Public

ChIP-seq peak caller for reads mapped to a graph-based reference genome

Python 17 6

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Showing 10 of 80 repositories

kmercount Public
Simple kmer counter using Bloom filter and efficient hash function

C++ 2 AGPL-3.0 1 3 0 Updated May 2, 2024
fdr_hacking Public

Python 1 MIT 0 0 2 Updated May 2, 2024
immuneML Public
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

Python 56 AGPL-3.0 28 0 0 Updated Apr 29, 2024
ligo Public
LIgO is a tool for simulation of adaptive immune receptors and repertoires.

Python 0 AGPL-3.0 0 0 0 Updated Apr 22, 2024
localega-tsd-proxy Public

Java 0 MIT 0 6 2 Updated Apr 19, 2024
IN-BIOSx000 Public Forked from arvindsundaram/IN-BIOSx000
Course material for the IN-BIOSx000 course "Sequencing technologies, data analysis, and applications" at the University of Oslo

Python 0 CC0-1.0 10 0 0 Updated Apr 3, 2024
SimCal Public
Simulation Calibration codebase for evaluating ML pipelines between real and learned worlds

Python 0 Apache-2.0 0 0 0 Updated Mar 22, 2024
crypt4gh Public
Crypt4GH standard implementation

Java 2 MIT 6 2 8 Updated Feb 9, 2024
tsd-file-api-client Public
TSD File API Client

Java 0 MIT 2 2 5 Updated Feb 6, 2024
LocalEGA-deploy-swarm-fork Public Forked from neicnordic/LocalEGA-deploy-swarm
Docker Swarm deployment of LocalEGA

Java 0 MIT 3 0 1 Updated Jan 19, 2024

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