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UC San Diego Center for Computational Biology & Bioinformatics

Popular repositories

  1. visJS2jupyter visJS2jupyter Public

    visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells

    Jupyter Notebook 78 17

  2. VAPr VAPr Public

    VAPr: A Python package for NoSQL variant data storage, annotation and prioritization

    Python 34 3

  3. NetColoc NetColoc Public

    development of network co-localization tool

    Jupyter Notebook 11 5

  4. C-VIEW C-VIEW Public

    This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.

    Python 9 2

  5. cirrus-ngs cirrus-ngs Public

    Python 8 2

  6. gsia gsia Public

    Gene Set Information Analysis

    R 7 1

Repositories

Showing 10 of 24 repositories
  • MitoProteomicsMethods Public archive

    Mitochondrial Proteomic Analysis for Yu/Pekkurnaz Project

    Jupyter Notebook 0 MIT 0 0 0 Updated May 3, 2024
  • trem2_sRNAseq Public

    analysis of scRNAseq for Trem2 paper

    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 21, 2024
  • Jupyter Notebook 0 0 0 0 Updated Oct 9, 2023
  • visJS2jupyter Public

    visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells

    Jupyter Notebook 78 MIT 17 7 2 Updated Aug 15, 2023
  • NetColoc Public

    development of network co-localization tool

    Jupyter Notebook 11 MIT 5 3 0 Updated Aug 11, 2023
  • C-VIEW Public

    This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.

    Python 9 MIT 2 22 0 Updated Aug 1, 2023
  • pAML_StemCell_Methods Public

    All computational code for execution of analyses described in Methods

    Jupyter Notebook 0 0 0 0 Updated Jan 24, 2023
  • MPN_atlas_methods Public

    Source code for methods for A Dynamic Pre-Leukemia Stem Cell Atlas of Myeloproliferative Neoplasm Evolution

    Jupyter Notebook 2 MIT 0 0 0 Updated Jan 20, 2023
  • shinyGWAS Public

    visualization for GWAS. Mostly based on outputs from FUMA

    Jupyter Notebook 2 0 7 0 Updated Aug 17, 2022
  • SLC22_TCGA_Methods Public archive

    Whisenant/Nigam TCGA/SLC22 Analysis

    Jupyter Notebook 0 0 0 0 Updated Aug 17, 2022

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