OmicsQC is a statistical framework for integrating quality control metrics from multi-sample experiments such as cohort-level genomic profiling studies. Metrics are aggregated into quality scores which can be used to nominate samples for exclusion.
From CRAN:
install.packages('OmicsQC');
library(OmicsQC)Using devtools in R:
library(devtools);
install_github('https://github.com/uclahs-cds/package-OmicsQC');From source:
git clone https://github.com/uclahs-cds/package-OmicsQC.git
R CMD INSTALL package-OmicsQC- For a tutorial on how to use OmicsQC, check out our Vignette!
- For detailed information about available functions, check out our Function Reference!
- For updates, check out our Changelog!
Looking for guidance or support with OmicsQC? Look no further.
- Check out our Discussions page!
- Submit bugs 🐛, suggest new features 🌸 or see current work 🦾 at our Issues page.
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Authors: Hugo Anders Frelin, Helen Zhu, Paul C. Boutros (PBoutros@mednet.ucla.edu)
OmicsQC is licensed under the GNU General Public License version 2. See the file LICENSE.md for the terms of the GNU GPL license.
OmicsQC aggregates quality control metrics from multi-sample investigations and nominates samples for exclusion using an unbiased strategy.
Copyright (C) University of California Los Angeles ("Boutros Lab") All rights reserved.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.