Upgrade pyyaml

Release Notes

For: uc-cdis/peregrine

Notes since tag: 3.2.1

Notes to tag/commit: 61cb197

Generated: 2023-11-17

Dependency Updates

• Flask to >=2.2.5 (#205)
• PyYAML to >=5.4.1 (#208)
• gen3dictionary to >= 2.0.3 (#208)
• dictionaryutils to >=3.4.10 (#208)

Use Float for integer value

Release Notes

For: uc-cdis/peregrine

Notes since tag: 3.2.0

Notes to tag/commit: 3.2.1

Generated: 2023-07-31

Improvement

• Since there are some file having file_size larger than the largest possible
  Int32 type in GraphQL, we need to extend it to use Float. (#201)

Bug Fixes

• Fix /datasets to correctly return an error when no nodes parameter is
  provided (#202)

Improvements

• Log more error details in the core metadata endpoint (#200)

3.2.0

Release Notes

For: uc-cdis/peregrine

Notes since tag: 3.1.2

Notes to tag/commit: 3.2.0

Generated: 2023-03-09

New Features

• Add the /coremetadata endpoint, replacing the pidgin service (#198)

Improvements

• Improve the format of the citation automatically generated by the
  /coremetadata endpoint (#198)
• Use central github workflow actions for image build and push (#192)
• Removing Veracode scanning pipeline (#188, #189)

Deployment Changes

• The pidgin service can be removed if data-portal is on version 5.4.2/2023.05 or newer.
  Its functionalities are available at peregrine's /coremetadata endpoint (#198)
• ASK AN ADMINISTRATOR TO DELETE THE PIDGIN DEPLOYMENT if you remove pidgin. This is NOT automatic (#198)
• Peregrine does not rely on configuration files in the cloud-automation
  repository anymore. The Peregrine configuration files are in the Peregrine
  repository. (#191)

Bug Fixes

• update to latest base image to avoid issue with dockerrun (#183)

Dependency Updates

• Python 3.9 (#191)
• Upgrade dependencies (#191)
• Upgrade Flask-Cors to version 3.0.9 or higher. (#184)
• Upgrade python-Levenshtein to version 0.12.1 or higher. (#184)
• Use new Python base image (now: Debian, before: Alpine) (#182)

3.1.2

Release Notes

For: uc-cdis/peregrine

Notes since tag: 3.1.1

Notes to tag/commit: 3.1.2

Generated: 2021-10-29

Improvements

• increase http timeout on the uWSGI side to 10 minutes (#181)

update base image

Release Notes

For: uc-cdis/peregrine
Notes since tag: 3.1.0
Notes to tag/commit: e1268bf
Generated: 2021-09-08

Improvements

• update to latest python base image (#179)

3.1.0

Release Notes

For: uc-cdis/peregrine

Notes since tag: 3.0.1

Notes to tag/commit: 3.1.0

Generated: 2021-08-17

Bug Fixes

• Handle exceptions without 'message' attribute (#178)
• Fix bug where project id count returns 2 instead of 1 (#162)

Improvements

• Adopt new base img with dd apm (#177)

Dependency Updates

• Bumps jinja2 from 2.10.1 to 2.11.3.
  (#171)
• Bumps pyyaml from 5.1 to 5.4. (#173)
• psqlgraph: up to 3.0.1 (#175)
• Fix dependency resolution issue: python-keystoneclient to ~=1.8, addict to
  ~=2.1 (#165)
• pin cryptography 2.8 b/c of known bug with 2.9 (#157)

Local run.py fix

Release Notes

For: uc-cdis/peregrine

Notes since tag: 3.0.0

Notes to tag/commit: 3.0.1

Generated: 2020-03-26

Improvements

• Running Peregrine locally with mocked authz no longer requires passing
  access tokens (#156)

Python 3 Release

Release Notes

For: uc-cdis/peregrine

Notes since tag: 2.1.1

Notes to tag/commit: 3.0.0

Generated: 2020-01-06

New Features

• Python 3 🎉 (#154)
• Use special .secinclude file to list source code for Veracode security
  scanning (#151)
• Use special .secexclude to forcefully exclude some files (empty) (#151)

Breaking Changes

• Python 3 Support (not expected to be backwards compatible) (#154)

Dependency Updates

• bumped dependencies to python3 compatible versions (#154)
• also bumped Jinja2 and urllib3 for security compliance (#154)

Bug Fixes

• Fix creation date and update date filters (#155)

Improvements

• Dependabot creates public PRs for security updates. Disabling it. (#152)
• Make DependaBot only update to "security" updates (#148)
• Setup Dependabot automatic security scanning (#143)

Get ARBORIST_URL from manifest

Release Notes

For: uc-cdis/peregrine

Notes since tag: 2.1.0

Notes to tag/commit: 2.1.1

Generated: 2019-10-04

Deployment Changes

• ARBORIST_URL environment variable replaces broken default ARBORIST config
  variable (#142)

Dependency update: Flask 1.1.1

Release Notes

For: uc-cdis/peregrine

Notes since tag: 2.0.1

Notes to tag/commit: 2.1.0

Generated: 2019-09-25

Dependency Updates

• Flask 1.1.1, Werkzeug 0.16.0 (#140)