complex-flow

Initial work on a complex-valued fMRI preprocessing workflow.

Goals

Processing of both magnitude and phase data for both single- and multi-echo data
BIDS Derivatives-compatible outputs
A user-friendly CLI
Support for phase-based denoising within the workflow (when applicable), including phase regression
Support for coil-level data
Dynamic distortion correction, for multi-echo data, with DOCMA
Support for field maps and single-band reference images
Long-term, I want to move any workflows produced here into tools like SDCFlows and niworkflows

Name		Name	Last commit message	Last commit date
Latest commit History 36 Commits
.gitignore		.gitignore
Dockerfile		Dockerfile
README.md		README.md
complex_utils.py		complex_utils.py
outputs.py		outputs.py
phase.py		phase.py
run_tedana.py		run_tedana.py
run_workflow.py		run_workflow.py
sandbox.py		sandbox.py
singularity_dwidenoise.sh		singularity_dwidenoise.sh
split_files.py		split_files.py
test_commands.sh		test_commands.sh
test_docma.py		test_docma.py
test_dwidenoise.py		test_dwidenoise.py
test_romeo.sh		test_romeo.sh
utils.py		utils.py
workflows.py		workflows.py