Merge branch 'master-forge' into blueskyGephi

.github/workflows/pr.yml

@@ -0,0 +1,19 @@
+name: PR
+
+on:
+  pull_request:
+    branches:
+      - master-forge
+
+jobs:
+  build_and_test:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up JDK 11
+        uses: actions/setup-java@v2
+        with:
+          java-version: '11'
+          distribution: 'temurin'
+      - name: Build project with Maven
+        run: mvn -B package --file pom.xml

.github/workflows/release.yml

@@ -0,0 +1,38 @@
+name: release
+
+on:
+  push:
+    branches: [ master-forge ]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Maven Central Repository
+        uses: actions/setup-java@v2
+        with:
+          java-version: '11'
+          distribution: 'temurin'
+          gpg-private-key: ${{ secrets.GPG_PRIVATE_KEY }}
+          gpg-passphrase: GPG_PASSPHRASE
+
+      - name: Get NBM Keystore
+        run: |
+          echo "${{ secrets.NBM_KEYSTORE }}" > keystore.ks.asc
+          gpg -d --passphrase "${{ secrets.NBM_KEYSTORE_ENC_PASSPHRASE }}" --batch keystore.ks.asc > keystore.ks
+
+      - name: Build and publish package Linux
+        run: mvn --batch-mode -Djava.awt.headless=true -Dkeystore.password=${{ secrets.KEYSTORE_PASSWD }} package -P release
+        env:
+          GPG_PASSPHRASE: ${{ secrets.GPG_PASSPHRASE }}
+
+      - name: Configure Git user
+        run: |
+          git config --global user.email "github-action@users.noreply.github.com"
+          git config --global user.name "GitHub Actions"
+
+      - name: Update autoupdate content on gh-pages
+        run: mvn scm-publish:publish-scm -P release
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.gitignore

@@ -144,6 +144,7 @@ fabric.properties
 
 ### Intellij Patch ###
 # Comment Reason: https://github.com/joeblau/gitignore.io/issues/186#issuecomment-215987721
+.idea
 
 *.iml
 .idea/
@@ -178,4 +179,4 @@ nbdist/
 
 # End of https://www.gitignore.io/api/maven,eclipse,netbeans,intellij
 
-.java-version
+.java-version

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "modules/OpenSeadragonPlugin/src/main/resources/org/gephi/plugins/openseadragon"]
+	path = modules/OpenSeadragonPlugin/src/main/resources/org/gephi/plugins/openseadragon
+	url = https://github.com/totetmatt/gephi-openseadragon-plugin-frontend.git

README.md

@@ -95,7 +95,7 @@ To debug Gephi with your plugin, right click on the `gephi-plugins` project and
 
 To run Gephi with your plugin pre-installed when you click `Run`, create a `Maven` run configuration and enter `org.gephi:gephi-maven-plugin:run` in the command field. The working directory is simply the current project directory.
 
-To debug Gephi with your plugin, create a `Remote` configuration and switch the `Debugger mode` option to `Listen`. Then create a `Maven` run configuration like abobe but add `-Drun.params.debug="-J-Xdebug -J-Xnoagent -J-Xrunjdwp:transport=dt_socket,suspend=n,server=n,address=5005"` into the `Runner` > `VM Options` field. Then, go to the `Run` menu and first run debug with the remote configuration and then only run debug with the Maven configuration.
+To debug Gephi with your plugin, create a `Remote` configuration and switch the `Debugger mode` option to `Listen`. Then create a `Maven` run configuration like above but add `-Drun.params.debug="-J-Xdebug -J-Xnoagent -J-Xrunjdwp:transport=dt_socket,suspend=n,server=n,address=5005"` into the `Runner` > `VM Options` field. Then, go to the `Run` menu and first run debug with the remote configuration and then only run debug with the Maven configuration.
 
 When you make changes to your plugin and want to run Gephi with the changes, make sure to build the `gephi-plugins` root module, and not only your module. Otherwise, your changes won't be reflected.
 

modules/AgensGraphPlugin/README.md

@@ -0,0 +1,4 @@
+## AgensGraph Plugin
+
+This README supports Markdown, see [syntax](https://help.github.com/articles/markdown-basics/)
+

modules/AgensGraphPlugin/pom.xml

@@ -0,0 +1,123 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+    <modelVersion>4.0.0</modelVersion>
+    <parent>
+        <artifactId>gephi-plugin-parent</artifactId>
+        <groupId>org.gephi</groupId>
+        <version>0.10.0</version>
+    </parent>
+
+    <groupId>bitnine-global</groupId>
+    <artifactId>agensgraph-plugin</artifactId>
+    <version>1.0.0</version>
+    <packaging>nbm</packaging>
+
+    <name>AgensGraph Plugin</name>
+
+    <dependencies>
+        <!-- Insert dependencies here -->
+        <dependency>
+            <groupId>org.gephi</groupId>
+            <artifactId>db-drivers</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.gephi</groupId>
+            <artifactId>io-importer-api</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.gephi</groupId>
+            <artifactId>ui-utils</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-openide-windows</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-openide-util</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-openide-filesystems</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-openide-util-lookup</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-openide-dialogs</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-openide-modules</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-openide-util-ui</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-openide-awt</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-netbeans-api-progress-nb</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-netbeans-api-progress</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-netbeans-api-annotations-common</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-openide-nodes</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>net.bitnine</groupId>
+            <artifactId>agensgraph-jdbc</artifactId>
+            <version>1.3.2</version>
+        </dependency>
+        <dependency>
+            <groupId>org.netbeans.api</groupId>
+            <artifactId>org-netbeans-modules-settings</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.gephi</groupId>
+            <artifactId>io-importer-plugin</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.gephi</groupId>
+            <artifactId>graph-api</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.gephi</groupId>
+            <artifactId>project-api</artifactId>
+        </dependency>
+    </dependencies>
+
+    <build>
+        <plugins>
+            <plugin>
+                <groupId>org.apache.netbeans.utilities</groupId>
+                <artifactId>nbm-maven-plugin</artifactId>
+                <configuration>
+                    <licenseName>Apache 2.0</licenseName>
+                    <author>Dehowe Feng</author>
+                    <authorEmail></authorEmail>
+                    <authorUrl></authorUrl>
+                    <sourceCodeUrl>https://github.com/bitnine-oss/gephi-plugins/tree/agensgraph-plugin</sourceCodeUrl>
+                </configuration>
+            </plugin>
+        </plugins>
+    </build>
+    <properties>
+        <maven.compiler.source>1.7</maven.compiler.source>
+        <maven.compiler.target>1.7</maven.compiler.target>
+    </properties>
+</project>
+
+

modules/AgensGraphPlugin/src/main/java/org/bitnine/importer/AgensGraphDatabaseImpl.java

@@ -0,0 +1,85 @@
+package org.bitnine.importer;
+
+import org.gephi.io.importer.api.AbstractDatabase;
+import org.gephi.io.importer.api.PropertiesAssociations.EdgeProperties;
+import org.gephi.io.importer.api.PropertiesAssociations.NodeProperties;
+
+/**
+ *
+ * @author dehowefeng
+ */
+public class AgensGraphDatabaseImpl extends AbstractDatabase{
+
+    private String nodeQuery;
+    private String edgeQuery;
+    private String nodeAttributesQuery;
+    private String edgeAttributesQuery;
+    private String graphPath;
+
+    public AgensGraphDatabaseImpl() {
+
+        //Default node associations
+        properties.addNodePropertyAssociation(NodeProperties.ID, "id");
+        properties.addNodePropertyAssociation(NodeProperties.LABEL, "label");
+        properties.addNodePropertyAssociation(NodeProperties.X, "x");
+        properties.addNodePropertyAssociation(NodeProperties.Y, "y");
+        properties.addNodePropertyAssociation(NodeProperties.SIZE, "size");
+        properties.addNodePropertyAssociation(NodeProperties.COLOR, "color");
+        properties.addNodePropertyAssociation(NodeProperties.START, "start");
+        properties.addNodePropertyAssociation(NodeProperties.END, "end");
+        properties.addNodePropertyAssociation(NodeProperties.START, "start_open");
+        properties.addNodePropertyAssociation(NodeProperties.END_OPEN, "end_open");
+
+        //Default edge associations
+        properties.addEdgePropertyAssociation(EdgeProperties.ID, "id");
+        properties.addEdgePropertyAssociation(EdgeProperties.SOURCE, "source");
+        properties.addEdgePropertyAssociation(EdgeProperties.TARGET, "target");
+        properties.addEdgePropertyAssociation(EdgeProperties.LABEL, "label");
+        properties.addEdgePropertyAssociation(EdgeProperties.WEIGHT, "weight");
+        properties.addNodePropertyAssociation(NodeProperties.COLOR, "color");
+        properties.addEdgePropertyAssociation(EdgeProperties.START, "start");
+        properties.addEdgePropertyAssociation(EdgeProperties.END, "end");
+        properties.addEdgePropertyAssociation(EdgeProperties.START, "start_open");
+        properties.addEdgePropertyAssociation(EdgeProperties.END_OPEN, "end_open");
+    }
+
+    public String getGraphPath() {
+        return graphPath;
+    }
+
+    public void setGraphPath(String graphPath) {
+        this.graphPath = graphPath;
+    }
+
+    public String getEdgeAttributesQuery() {
+        return edgeAttributesQuery;
+    }
+
+    public void setEdgeAttributesQuery(String edgeAttributesQuery) {
+        this.edgeAttributesQuery = edgeAttributesQuery;
+    }
+
+    public String getEdgeQuery() {
+        return edgeQuery;
+    }
+
+    public void setEdgeQuery(String edgeQuery) {
+        this.edgeQuery = edgeQuery;
+    }
+
+    public String getNodeAttributesQuery() {
+        return nodeAttributesQuery;
+    }
+
+    public void setNodeAttributesQuery(String nodeAttributesQuery) {
+        this.nodeAttributesQuery = nodeAttributesQuery;
+    }
+
+    public String getNodeQuery() {
+        return nodeQuery;
+    }
+
+    public void setNodeQuery(String nodeQuery) {
+        this.nodeQuery = nodeQuery;
+    }
+}