Digital pathology image viewer with support for human/machine generated annotations and markups.
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Updated
May 16, 2024 - JavaScript
Digital pathology image viewer with support for human/machine generated annotations and markups.
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
Implementation of state of the art algorithms for uneven illomination correction in whole slide imaging
QuPath - Bioimage analysis & digital pathology
a browser-based DICOM viewer
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
Read and write TIFF files
This repo provides an exhaustive pipeline of processing TCGA whole-slide images for downstream multiple instance learning.
A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image
Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "
An open source online platform for collaborative image labeling of almost everything
Awesome List of Digital and Computational Pathology Resources
[ESWA 2023] Implementation of DSCA: A Dual-stream Network with Cross-attention on Whole-Slide Image Pyramids for Cancer Prognosis
MarrowQuant is a user-friendly algorithm for the quantification of H&E bone marrow tissue biopsies in whole slide images, implemented as a series of QuPath Scripts. Keywords: Digital Pathology, Whole slide Imaging, QuPath, Bone Marrow, Adiposity
Pathology Atlas (English version of Patoloji Atlası)
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