Predict mechanism underlying structural variants
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Updated
Feb 23, 2021 - Python
Predict mechanism underlying structural variants
Scripts used on a cluster that demonstrate vcf file manipulation and preparation.
Viral genome assembly pipeline for WGS using ONT
R-package to analyse and quantify aberrations in DNA-sequencing data
WDL-based pipelines
Discover VNTR-associated DELs that are hard to find using Illumina reads
An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
Testing structural variant (SV) callers for illumina germline whole genome sequence (WGS) data (human).
A snakemake pipeline for tick determination from ONT whole genome sequencing samples.
Multi-class classification of drug resistance in MTB clinical isolates
VIral GEnome ASsembly pipelines for WGS
Bio Big Data and Precision Medicine Training Course
yer a wizard, Harry
Target site duplication assessment from alignment file and genomic location of insertion sites.
Archived code for analyses in "Genomic signatures of divergent ecological strategies in a recent radiation of Neotropical wild cats" (Ramirez et al. 2022, MBE)
Python scripts created in the analysis of Anopheles mosquito genomes
Data and code repository for study aiming to understand ESBL carriage in Blantyre, Malawi
File manipulation/bioinformatics-type scripts that my colleagues have found useful in sequencing SARS-CoV2 (SC2).
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