Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
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Updated
May 24, 2024 - Python
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Hexrays Toolbox - Find code patterns within the Hexrays ctree
non-redundant, compressed, journalled, file-based storage for biological sequences
A modular annotation tool for genomic variants
genetic variant expressions, annotation, and filtering for great good.
provides common tools and lookup tables used primarily by the hgvs and uta packages
A phenotype-based tool for variant prioritization in WES and WGS data
VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
simuG: a general-purpose genome simulator
This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.
using all the bits for echt rapid variant annotation and filtering
Arioc: GPU-accelerated DNA short-read alignment
OpenAPI-based REST interface to biological sequences and sequence metadata
Mapping Clinically Relevant Mutations to Protein Structures
[in development] Proof-of-Concept variation translation, validation, and registration service
From SNP and structural variant calling to GWAS.
Reporting toolbox for happy output
Visualize microbial evolution at the SNP level!
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