tcga
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Collection of up-to-date metadata from TCGA.
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Mar 26, 2019
Example code supporting immunology research
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Oct 11, 2023 - HTML
GeneFlow is a scalable and flexible software library that encompasses data acquisition methods, preprocessing techniques, data analytics, data visualization, and Machine Learning algorithms that can be applied to genomic data.
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Sep 19, 2022 - Jupyter Notebook
Directions and code for generic GDC data downloads.
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Apr 26, 2018
bulk-RNAseq analysis for Transcriptomics Course 2021 (MSc Bioinformatics for Computational Genomics)
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Apr 2, 2022 - HTML
Analyzing TCGA cohorts and multiomic data in R
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Dec 23, 2023
Python implementation of the OpenGDC software https://github.com/cumbof/OpenGDC
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Jun 24, 2022 - Python
Use this program can let user quickly combine the miRNA/Gene expression and clinical data. Speed up the data preprocessing step.
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Nov 7, 2020 - Python
Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
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Aug 13, 2020 - R
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Oct 29, 2018 - R
HNSCC survival analysis
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Jun 13, 2021 - R
Benchmark survival ML models against a multimodal TCGA dataset
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Apr 21, 2023 - R
Genomic Data Commons API wrapper
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Nov 10, 2020 - Python
Python project for classification of normal vs tumoral samples using TCGA gene expression data for Scientific Programming Course 2021 (MSc Bioinformatics for Computational Genomics)
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Feb 12, 2022 - Jupyter Notebook
Data Exploration , visualization and deep learning detection as well classification of Histopathology image of cancers by CNN-VGG16 on tcga data set
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Jul 7, 2020 - Jupyter Notebook
Genomic Data Commons Query
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Nov 22, 2017 - R
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