Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
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Updated
May 31, 2024 - TypeScript
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
An RNA virus strain-level identification tool for short reads.
Module of the SailTrack system for measuring the forces acting on the boat maneuvers.
Rat strain ontology maintained by RGD
Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
The scripts developed here were created for my personal PhD project for exploring the effect of strain on the superconducting critical temperature
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
Planetary crustal and mantle properties, and lithospheric displacements, stress and strain, calculations in spherical harmonics.
⚡🧠A finite element Python implementation
This repository contains code for an Android application called "StrainCalculator" which calculates strain values based on user input.
Scissor Pool Lifting Mechanism
Theoretical spectral response of a water well to harmonic strains
These are three programs for post-processing the results of ETFE cushion photogrammetry to calculate the displacement, strain and stress distributions.
Metabolic Engineering Workbench
GAN/convolutional and Transformer models to predict missing mechanical information given limited known data in part of the domain, and further characterize the composite geometries from the recovered mechanical fields for 2D and 3D complex microstructures
Abaqus script to compute Green strain from Nominal strain
Deforming crystal (lagrangian strain) for VASP
Implementation of geometric phase analysis (GPA) in C++
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