Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
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Updated
May 31, 2024 - TypeScript
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Metabolic Engineering Workbench
Implementation of geometric phase analysis (GPA) in C++
A Schrödinger-Poisson solver for 2D materials with 1D interfaces (wires)
A finite element code to solve for the dynamic fragmentation of concrete at different strain rates. A bi-linear cohesive zone model is used for the simulation
Bash scripts to plot coulomb results on gmt
⚡🧠A finite element Python implementation
GAN/convolutional and Transformer models to predict missing mechanical information given limited known data in part of the domain, and further characterize the composite geometries from the recovered mechanical fields for 2D and 3D complex microstructures
Theoretical spectral response of a water well to harmonic strains
Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
Rat strain ontology maintained by RGD
Planetary crustal and mantle properties, and lithospheric displacements, stress and strain, calculations in spherical harmonics.
This repository is a pythonic solution to the 'GPS and infinitesimal strain analysis' method, published by Phil Resor and Vince Cronin. The non-pythonic method may be found on the SERC website under the GETSI teaching materials.
Abaqus script to compute Green strain from Nominal strain
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