DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
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Updated
Apr 1, 2024 - Julia
DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
nSBM: multi branch topic modeling
Agent-based Stochastic Kinetics
Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics
A set of integrators for the Langevin equation.
ANTARES Visualizations
Networkx implementation of the SIS epidemic model for large and heterogeneous networks
Implementation of SIS epidemic model for large and heterogeneous networks
Implementation of SIS epidemic model with a Gillespie Algorithm - NOT optimized
Implementation of SIS epidemic model for large and heterogeneous networks using Fortran.
Implementation of algorithms for simulating gene expression and translation in order to investigate about NF-kB model in colon cancer cells.
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
Repository for stochastic methods scripts and functions.
Implementation of Gillespie Stochastic Simulation Algorithm
This repository includes Matlab codes/routines that were used in our manuscript entitled "Importance sampling for a robust and efficient multilevel Monte Carlo estimator for stochastic reaction networks" that can be found in this preprint: https://arxiv.org/abs/1911.06286
Generate realizations of stochastic processes in python.
StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
This repository contains code for simulatuing 'miRNA-mediated negative feedback loop' model, given in the manuscript 'Effects of miRNA-mediated negative feedback on gene expression', using Gillespie algorithm
Code and reading materials related to my BIOL0044 MSci Investigative Project at the Lane Origins lab.
Multiscale Modelling Tool - mathematical modelling without the maths
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