Code and reading materials related to my BIOL0044 MSci Investigative Project at the Lane Origins lab.
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Updated
Apr 9, 2022 - HTML
Code and reading materials related to my BIOL0044 MSci Investigative Project at the Lane Origins lab.
Master Equation Random Early Detection (mRED) algorithm implementation
Stochastic Simulation of Chemical Kinetics
Bernoulli Trials- Biased & Unbiased Coin Flips - Uniform Distribution
Implementation of SIS epidemic model with a Gillespie Algorithm - NOT optimized
Implementation of algorithms for simulating gene expression and translation in order to investigate about NF-kB model in colon cancer cells.
Scalable stochastic simulation of chemical networks
Fortran implementation of the Krylov-FSP-SSA algorithm for solving the Chemical Master Equation.
Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics
Agent-based Stochastic Kinetics
Simulacion de coronavirus 2019-ncov
Automated simultaneous generation of statistics for multiple record Id’s running on an instance of an Access point, thus the automatic generation of multiple CSV, JSON and PDML files for numerous record Id’s. Analyzed statistics which contained PDU’s, SDU’s and other fields for the goal of improvising and predicting throughput for access points
Repository for stochastic methods scripts and functions.
This repository contains code for simulatuing 'miRNA-mediated negative feedback loop' model, given in the manuscript 'Effects of miRNA-mediated negative feedback on gene expression', using Gillespie algorithm
Implementation of Gillespie Stochastic Simulation Algorithm
Stochastic Process Calculus blockchain network simulator
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Simulate games involving a system of multiple state machines interacting with each other
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