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snakemake-wrappers

Here are 4 public repositories matching this topic...

dohlee / snakemake-wrappers

🐍 Snakemake wrappers for bioinformatics.

wrapper bioinformatics snakemake reproducible-research bioinformatics-analysis snakemake-workflows snakemake-wrappers

Updated Feb 8, 2023
Python

tdayris / fair_macs2_calling

Snakemake workflow used to call peaks with Macs2

snakemake sambamba homer bowtie2 macs2 snakemake-workflow snakemake-wrappers

Updated Apr 16, 2024
Python

tdayris / fair_genome_indexer

Download and index Ensembl sequences and annotations

snakemake ensembl fair snakemake-workflow snakemake-wrappers

Updated May 22, 2024
Python

tdayris / fair_bowtie2_mapping

Align reads over a reference genome, filter aligned-reads, and mark duplicates

snakemake multiqc sambamba bowtie2 snakemake-workflow snakemake-wrappers

Updated Apr 24, 2024
Python

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