A DSL for data-driven computational pipelines
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Updated
May 9, 2024 - Groovy
A DSL for data-driven computational pipelines
server for storage and management of singularity images
Cloud computing How-To
command line tool for working with singularity hub and singularity containers
CoMorMent-Containers
Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs
The Scientific Filesystem Specification and Documentation
Various Singularity recipes I've used to generate containers
Modular application recipes for the Scientific Filesystem (SCIF)
A framework for semi-automated analysis of Amplicon Sequencing data
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
Optimize workflow for binning metagenomic short reads from multiple samples
singularity container tools for continuous integration and quality assessment
Getting Started with Containers on HPC
A short tutorial on building an Apptainer image for fast.ai course/book
A collection of Dockerfiles and Singularity definition files used to build the containers that are used on the Roar cluster!
Singularity containers for Cylc
Scripts and notes for singularity containers used for bioinformatics analyses
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