Effect of temperature stress on Plasmodium Falciparum. Code for data analysis. Rshiny app for data exploration.
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Updated
Sep 12, 2021 - R
Effect of temperature stress on Plasmodium Falciparum. Code for data analysis. Rshiny app for data exploration.
Code and access to data related to the SIFT-seq publication by Chandran et al., Nature Medicine (2022)
Graph Auto-Encoders (GAE) for Gene Regulatory Network (GRN) completion using scRNA-Seq datasets
This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
scRNA-seq to analyze cells during human pluripotent stem cell differentiation into islets at D11, D14, D21, D32, D39.
scCTS: identifying the cell type specific marker genes from population-level single-cell RNA-seq
scRNA-seq datasets to support Jung et al, Sci Adv, 7(6): eabe5735, 2021. DOI: 10.1126/sciadv.abe5735
Programming in practice based on RNA-seq, scRNA-seq, ATAC-seq, scATAC-seq or ChIP-seq.
Single-Cell Data Science
I've written a few functions that help me look through scRNA-seq data while working with Seurat.
Code for exploration of non-coding elements in single-cell RNA seq data
ThunderBio scRNA-seq pipeline
Ligand-Receptor Interaction map based on scRNA-seq and pathway enrichment
Tobias Beers, Perry Moerland: MSc Computational Science project on (hierarchical) PPCA-techniques for scRNA-seq data.
Scripts for analysis of transcriptomic data of the developing cornea
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