scrna-seq-analysis
Here are 124 public repositories matching this topic...
R Scripts used in scRNA-seq analysis of T2D Islets
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Dec 11, 2020
Simultaneous analysis of genes and transposable elements (TEs) from 10X scRNAseq datasets derived from CD and NIBD samples using Alevin.
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Aug 16, 2021 - R
A comprehensive source for Stathopoulos lab code generated and used in data analysis.
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Feb 23, 2023 - Shell
🧫 Comparison between COTAN and state of the art libraries for the analysis of scRNA-seq data.
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Dec 7, 2023 - Jupyter Notebook
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
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Apr 30, 2024 - Jupyter Notebook
An autoencoder based imputation of the sparse single cell RNA-seq data.
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Apr 6, 2019 - Python
Scripts from my Master's Dissertation on the UoE supercluster. Work in progress
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Oct 6, 2023 - Shell
Repository to store and share all related code for the Uterine macrophages and NK cells Project from the Scott Gordon Laboratory at the Children's Hospital of Philadelphia
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Feb 29, 2024 - R
scRNA cluster via Seurat package
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Sep 15, 2023 - R
R package to assign an initial bone-related cell type
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Oct 3, 2023 - R
Gene set enrichment analysis from scRNA seq data : in search of the original tissue
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Apr 19, 2022 - R
Hierarchical and high-resolution cell-type identification for single-cell RNA-seq data based on ScType.
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Oct 11, 2023 - R
Multi Resolution Cluster Optimization
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Nov 16, 2023 - R
Pseudotime analysis of OR expression during OSN differentiation
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Mar 12, 2022
scRNA-seq datasets to support Jung et al, Sci Adv, 7(6): eabe5735, 2021. DOI: 10.1126/sciadv.abe5735
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Feb 16, 2021 - R
Single-Cell Data Science
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Nov 30, 2020 - Python
I've written a few functions that help me look through scRNA-seq data while working with Seurat.
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Dec 8, 2020 - R
Basic pipeline of scRNA-seq downstream analysis
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Jan 15, 2024 - Jupyter Notebook
Repository for workshop study projects in Bioinformatics Institute 2023-2024
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Apr 27, 2024 - Jupyter Notebook
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