PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
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Updated
May 28, 2024 - Python
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
RNA-seq replication analysis.
Pipeline for generating RNAseq-based cancer patient reports
A python package for working with inputs to and outputs from the toil-rnaseq pipeline
A book that discusses topics and contains tutorials relevant to population genomics
This Repository contains various Flowcharts, Visual and Graphical representations which are all created for educational purposes
Snakemake pipeline for alternative slicing analysis with VAST-TOOLS
This tutorial is created for educational purpose
A comprehensive pipeline for RNAseq data analysis
pilot pipeline that includes tool containerization
In this repository : i have created RNAseq pipeline using snakemake rules
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Simple Snakemake RNA-Seq pipeline
Docker Integrated Comparison of Alternative Splicing (AS) Tools. Benchmarking AS tools and genomic alignment tools.
Pipeline for calling and analyzing variants from RNA-Seq data
These snakefiles are prepared for the snakemake pipeline for the RNASeq analysis
Snakemake+singularity RNAseq processing pipeline
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
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