rna-structure
Here are 59 public repositories matching this topic...
GTfold is a fast, scalable multicore code for predicting RNA secondary structure and is one to two orders of magnitude faster than the de facto standard programs and achieves comparable accuracy of prediction.
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Dec 28, 2020 - C++
Architecture of Large Projects in Bioinformatics (University project)
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Jan 21, 2017 - Python
Final Project : Algorithms and Object-Oriented programming. Secodary structure of ARN molecules
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Apr 27, 2021 - Python
Deciphering the link between transcript and protein structure
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Jan 3, 2024 - Python
RNA Pseudoknotted Secondary Structure Prediction Using Strict Hierarchical Folding
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Apr 29, 2024 - C
Data cleaning and analysis of LASLO results
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Oct 14, 2021 - R
Solving RNA Folding Problems with Linear/Integer Programming
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Jun 3, 2023 - Python
🧬 Taller de Decodificación de ARN con Python
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Jun 2, 2020 - Jupyter Notebook
Extension for creating visualizations of distance restraints in PyRy3D Chimera Extension
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Oct 22, 2018 - Python
Official code of RTM-align: an improved RNA alignment tool with enhanced short sequence performance via post-standardization and fragment alignment.
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May 27, 2024 - C++
Plotting engine for SEISMIC-RNA
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May 6, 2024 - Jupyter Notebook
Pre-processing pipeline for RNA crosslinking and High throughput sequencing data.
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Feb 19, 2024 - R
Repo for the comradesOO R package. Designed for the analysis of RNA structural data obtained through RNA cross-linking and high-throughput sequencing experiments
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May 21, 2024 - R
Bioinformatics Data Structures & Algorithms [such as the Q-Gram Index, scoring alignments , rna-structure prediction, generating the BLAST-Ńeighborhood and more.]
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May 17, 2024 - C++
PyMOL snippet library is written in Python for use in RStudio via the R reticulate package and the PyMOL Python API.
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May 15, 2024 - Vim Snippet
Code related to TIsigner manuscript and webserver
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Oct 20, 2021 - Jupyter Notebook
JavaFX widgets to visualize and manipulate RNA structures.
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Nov 18, 2021 - Kotlin
Are RNA 3D modeling transformers created equal?
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Feb 15, 2024 - Shell
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