Project to simulate simple Oxford Nanopore Technologies RNA signals
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Updated
May 15, 2024 - Python
Project to simulate simple Oxford Nanopore Technologies RNA signals
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
Python library to access Gene Expression Omnibus Database (GEO)
An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
Image Encryption using GENOMICS (Central Dogma algorithm).
A comprehensive pipeline for RNAseq data analysis
🧬 Prediction of m6A RNA modifications on all SG-NEx direct RNA-Seq samples
This repo is a template for running differential gene expression analysis of RNA-seq count data followed by gene set enrichment analysis. This workflow is run in R using Rmarkdown. It is based around the popular R packages, DESeq2, fGSEA, and others.
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
eproduciton of a publication regarding gene expression in different phases of lactation in humans
Automated and friendly RNA-seq analysis (migrated to Parse Server)
Various functions to inspect, extract, and visualise long-read RNA-seq data.
DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
Ontology of RNA Sequencing
A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).
A pipeline to assess the quantification of transcripts.
A script to find adaptor and index sequence in raw small RNA sequencing data
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