Colorectal cancer CMSs subtyping and personalized medication recommendation based on RNA seq pathway analysis
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Updated
Jun 8, 2022 - Jupyter Notebook
Colorectal cancer CMSs subtyping and personalized medication recommendation based on RNA seq pathway analysis
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
Single Cell RNA-seq analysis of Persister Cells to unearth key stress pathways and core, differential genes of those respective pathways
Clair3-RNA - a long-read small variant caller for RNA sequencing data
Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
Simple RNA-seq upstreaming Pipeline using Nextflow
Workflow for differential gene expression analysis for non-replicate samples using DEGseq
In this reposity I will give you all script I created. All this script are specialised for one way : annalyse RNA-seq data.
In development scripts for EvolOMICs group's NGS Data Analysis Pipeline
Actividades de la asignatura de Análisis de transcriptómicos de la expresión génica
A small python tool for RNA-seq workflows
Automated and friendly RNA-seq analysis (migrated to Parse Server)
In this repository, I try to replicate the results of Rodriguez2017
Tool to identify chimeric events from RNA-Seq data
Lightweight RNA-seq pipeline to go from fastqs to differential expression using kallisto and sleuth
This repository contains all the scripts necessary to perform RNA-Seq analysis on HTC CRC Pitt.
Workflow for de novo transcriptome assemblies from paired-end illumina reads, annotation and quality checks
Kallisto-sleuth pipeline in snakemake.
An analysis script routine to assess if samples that were prepared with Lexogen's barcoded targeted QuantSeq Flex library preparation contain copies of the SARS-CoV-2 virus.
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