RNA-Seq tutorial materials - slides, training data, code lines
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Updated
Dec 13, 2017 - HTML
RNA-Seq tutorial materials - slides, training data, code lines
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.
DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.
Collection of scripts to map eQTL with RNAseq Data and Genotype by Sequencing
GREIN : GEO RNA-seq Experiments Interactive Navigator
🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.
Sample Data for MMAPPR2
Scripts used to analyze tomato meta-transcriptome from short-read host RNA-seq data in Chialva et al. (2020)
Epigenomics workflow system for the semi-automated analysis of NGS data
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Build highly accurate transcripts from long-read RNA data
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
This is a repository for a pipeline used to identify imprinted genes or allele specific expressions using Illumina next generation sequencing (NGS) platform. This repository contains a work in progress to identify imprinted genes in polyploid species.
M5NRv2 -- non-redundant protein and rRNA database integration
Estimation of Promoter Activity from RNA-Seq data
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