6-frame proteogenomic peptide-spectrum match identification engine
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Updated
Sep 4, 2022 - Java
6-frame proteogenomic peptide-spectrum match identification engine
High performance io library for proteogenomics
Proteomic evidences can improve the existing genome annotation by finding novel coding regions or genome reannotations. These scripts can perform such tasks.
Scripts for lncRNA Project is a novel mass spectrometry-based peptide sequencing pipeline of the identification of LncRNA-derived immunopeptidome.
ProteoGenDB: A Fast Proteogenomic Pipeline for Identifying Sequence Variants in Proteomics Data
Protegenomics analysis based on Pangenome references
My codes for proteomics, genomics and proteogenomics
Research into statistical distributions of genomes, proteomes and reactomes
Saccharomyces cerevisiae information, gene calling and ORF identification assistant
A tool for quality control and annotation of variant peptides after FDR in proteogenomics
Denovo Proteogeomics pipeline to identify clinically relevent novel variants from RNAseq and Proteomics data.
PepQuery: a targeted peptide search engine
Library for Proteomics research literatures, tools and databases.
A python library with scripts and helpers classes for quantms workflow
This project aims at defining a set of guidelines for reproducible mass spectrometry-based experiments.
Python packages for easy execution of proteogenomic workflow
Multi-Omics Peptide Generator
In Silico Trypsin/Lys-C Clevage Site Prediction
Proteogenomics database-generation tool for protein haplotypes and variants
Customized protein database construction
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