Superpose3D is a software for local comparison of protein structures that allows for user-defined structure representations

Database of HTH-DNA complexes

InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.

R package for manipulating Protein Data Bank files

A fork of Autodock Vina for DeltaVina scoring function

A novel approach to pose selection in protein-ligand docking based on graph theory.

A toolkit for predicting the binding mode of small molecules interacting with proteins based on interfacial rigidification, as assessed by graph theoretic constraint counting on the covalent and noncovalent bond network. Raschka et al. (2016) Proteins: Structure, Function, and Bioinformatics

Insert b-factor values into PDB files

A Java program that checks RNA similarity between strings.

This script allows us to generate ORF for a given Protein Sequence.

A portfolio of the work done during COMP 260 during S17 at Wesleyan University

Small Libraries of Protein Fragments Accurately Model Native Protein Structures

Database of Structural Propensities of Proteins (dSPP) raw data repository by Peptone Inc.

CheShift is a software for prediction of 13Cα and 13Cβ chemical shifts and validation of protein structures.

Foldit model of BglB for the Bagel project

Leverage deep learning techniques to predict protein structure (on-going)

Elastic Network Contact Model (coarse-grained Normal Mode Analysis software)

Search for new PDB structures corresponding to a search term and deposited after a certain date.

This script aims at reading a given PDB file and generation dihedral angles from it.