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Oct 17, 2017 - Python
protein-structure
Here are 483 public repositories matching this topic...
GRASP-Func: Function sorting with local graph representation
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Jun 28, 2018 - Python
Superimpose a set of protein structures and report a RSMD matrix, in CSV and Mega-compatible formats, using Pymol as a module
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Jul 6, 2020 - Python
Demonstrating analysis of PDBsum-related data via active Jupyter sessions provided via MyBinder.org
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Mar 22, 2022 - Jupyter Notebook
TMvisDB provides per-residue transmembrane topology annotations for all proteins in AlphaFold DB (~ 200 million proteins, September '22) predicted as transmembrane proteins (~ 46 million).
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Mar 13, 2023 - Python
A Tufts Research Technology Workshop detailing how to use AlphaFold 2 on the Tufts HPC cluster
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May 13, 2022 - HTML
A transformer network trained to predict end-to-end single sequence protein structure as a set of angles given amino acid sequences.
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Apr 29, 2023 - Python
The protein secondary structure classifier with 3 classes H/E/C (R implementation). Tertiary classifier is composed of binary classifiers using the combining scheme.
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Nov 21, 2023 - R
Create pseudoatoms at the centroid of the catalytic atoms of a residue
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Mar 26, 2024 - Rust
InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.
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Jun 17, 2016 - CSS
Alignement structurale d'une séquence protéique sur une structure protéique 3D.
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Feb 27, 2019 - Python
Course schedule from experience as a selected Undergraduate Teaching Assistant at the University of Pittsburgh course, BIOSC 1540 - Computational Structural Biology, taught by Dr. Jacob Durrant.
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Mar 18, 2019 - Python
Exploring evolutionary protein fitness landscapes
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Jul 17, 2020 - Python
classification of human cdk2 conformations
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Jan 30, 2022 - Jupyter Notebook
This repository contains codes for the regeneration of figures 3b and 3g in Tam, C., Kukimoto-Niino, M., Miyata-Yabuki, Y. et al. Targeting Ras-binding domain of ELMO1 by computational nanobody design. Commun Biol 6, 284 (2023).
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Sep 7, 2023 - Jupyter Notebook
De novo cyclic protein polypeptide design using reinforcement learning.
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Mar 1, 2024 - Python
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Mar 30, 2024 - Jupyter Notebook
All Python package to compute small angle X-ray scattering (SAXS) profiles in one-bead-per-residue approximation with numpy
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Nov 10, 2022 - Python
PPM.Mk.I.Beta
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Apr 3, 2024 - Python
Superpose3D is a software for local comparison of protein structures that allows for user-defined structure representations
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May 6, 2015 - C++
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