A Bio2BEL package for converting InterPro to BEL
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Updated
Apr 15, 2019 - Python
A Bio2BEL package for converting InterPro to BEL
Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.
Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.
Brivez is a bioinformatic tool thought as Quality of Life's improvement, providing high quantity of data in a snap, giving you a quick view on what you could find inside your transcriptome/sequences' list.
Pipeline to generate a profile-HMM of Kunitz domain starting from the structure of BPTI.
Using BLAST and Transdecoder.
An R package to identify plant transcription factors from protein sequence data and classify them in families
CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.
Snakemake pipeline for searching genomic sequences for those encoding proteins containing domains of choice
UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).
Refining Domain Boundaries and Performing Large Scale Parsing
THIS PROJECT IS NO LONGER SUPPORTED See Brivez Instead!! https://github.com/furacca/brivez/ - ------------------------------------------ - Cuterle is a bioinformatic tool which return an output file containing every domain annotated by InterProScan via Pfam or SMART analysis from the list of protein submitted.
dom2vec: Protein domain embeddings
Comparison of protein learning
FAS - Tool for Feature Architecture Similarity calculation
An automated method to map yeast variants to proteins modifications and functional regions
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
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