The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
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Updated
May 23, 2024 - Nextflow
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
Variational Inference of Polygenic Risk Scores
CoMorMent-Containers
Utilities for working with PGS Catalog API and scoring files
Julia implementation of Ge et al's PRScs
GAUDI: a penalized regression based PRS method designed specifically for admixed individuals
INVESTIGATING THE ASSOCIATION BETWEEN POLYGENIC RISK SCORE OF ADIPOSE TISSUE FUNCTION AND CARDIOVASCULAR DISEASE
Machine Learning in Genomics and Healthcare (COMP 565) Project
Machine Learning in Genomics and Healthcare (COMP 565) Project
quincunx: an R package to query, download and wrangle PGS Catalog data
A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.
Software program for generating synthetic datasets for genotypes and phenotypes
quincunx: an R package to query, download and wrangle PGS Catalog data
Toolkit to aid generation of advanced Polygenic Risk Scores (PRS) including SNP-allele tagging and interaction models, especially in HLA. Developed and maintained by Seth Sharp (S.sharp@exeter.ac.uk).
Multi Kernel Linear Mixed Models for Complex Phenotype Prediction
Polygenic Risk Scores (PRS) pipeline.
Those are the code files for producing the PheWAS analyses in the manuscript "Phenome-Wide Association Study of Polygenic Risk Score for Alzheimer’s Disease in Electronic Health Records". Part of our analyses included sensitive genomic data. Codes to produce AD PRS were not included here.
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