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MokaGuys

Popular repositories

  1. seglh-cnv seglh-cnv Public

    Scripts and docker images to run CNV pipelines

    R 3 1

  2. automate_demultiplex automate_demultiplex Public

    Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

    Python 1 2

  3. helpdesk helpdesk Public archive

    1 3

  4. dnanexus_swiss_army_SNP_bcftools_filter dnanexus_swiss_army_SNP_bcftools_filter Public

    This repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks

    Shell 1

  5. seglh-naming seglh-naming Public

    SEGLH naming schemes

    Python 1 1

  6. WGS_puberty_CNVs WGS_puberty_CNVs Public

    Scripts for filtering WGS Puberty SV data

    1

Repositories

Showing 10 of 186 repositories
  • automate_demultiplex Public

    Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

    Python 1 2 59 1 Updated May 30, 2024
  • mokabed Public

    Generates BED files

    Python 0 0 12 0 Updated May 30, 2024
  • moka-fe Public

    This repo is incomplete and serves as a backup of some code from Moka. It includes some legac(hitt)y code.

    Python 0 4 0 0 Updated May 30, 2024
  • oncodeep_upload Public
    Python 0 0 0 0 Updated May 30, 2024
  • dnanexus_mokabed Public

    Utilises the moka-guys/mokabed code to generate BED files

    Python 0 1 5 1 Updated May 30, 2024
  • dnanexus_multiqc Public

    DNAnexus app running MultiQC to generate run wide quality control (QC) using the outputs from MokaAMP, MokaPipe and MokaWES pipelines

    Shell 0 1 8 0 Updated May 30, 2024
  • dnanexus_mokapicard Public

    DNAnexus app using Picard Tools to generate quality-control (QC) statistics from mapped/aligned reads

    Shell 0 0 0 0 Updated May 30, 2024
  • dnanexus_verifybamid Public

    DNAnexus app which runs verifyBamID to detect sample contamination from population allele frequencies

    Shell 0 1 0 0 Updated May 30, 2024
  • dnanexus_upload_multiqc Public

    App to upload multiqc files to genomics server

    Shell 0 1 3 0 Updated May 29, 2024
  • trend_analysis Public

    A script to create per test type and per sequencer trend analysis reports using MultiQC output files.

    Python 0 0 20 0 Updated May 29, 2024
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