quincunx: an R package to query, download and wrangle PGS Catalog data
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Updated
Jul 4, 2023 - R
quincunx: an R package to query, download and wrangle PGS Catalog data
Julia implementation of Ge et al's PRScs
Polygenic risk modeling with latent trait-related genetic components
Family history and polygenic risk of cardiovascular disease: independent factors associated with secondary cardiovascular manifestations in patients undergoing carotid endarterectomy
Machine Learning in Genomics and Healthcare (COMP 565) Project
GAUDI: a penalized regression based PRS method designed specifically for admixed individuals
INVESTIGATING THE ASSOCIATION BETWEEN POLYGENIC RISK SCORE OF ADIPOSE TISSUE FUNCTION AND CARDIOVASCULAR DISEASE
Machine Learning in Genomics and Healthcare (COMP 565) Project
power calculator for Genetic Risk Scores (GRS)
Those are the code files for producing the PheWAS analyses in the manuscript "Phenome-Wide Association Study of Polygenic Risk Score for Alzheimer’s Disease in Electronic Health Records". Part of our analyses included sensitive genomic data. Codes to produce AD PRS were not included here.
Polygenic Risk Scores (PRS) pipeline.
This repository contains the programming codes used in Genetic analysis of amyotrophic lateral sclerosis identifies contributing pathways and cell types https://advances.sciencemag.org/content/7/3/eabd9036
Variational Inference of Polygenic Risk Scores
quincunx: an R package to query, download and wrangle PGS Catalog data
Cross-Trait Penalized Regression using Summary Statistics
A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.
Software program for generating synthetic datasets for genotypes and phenotypes
Utilities for working with PGS Catalog API and scoring files
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