Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97

Public repository of data and analyses from Dirks and Jackson (2020), "Community structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy", Applied and Environmental Microbiology 86 (19)

Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies

Assembly of chloroplast genome using long-reads and short-reads for Genomics Course 2021 (MSc Bioinformatics for Computational Genomics)

A small example to test DENTIST's workflow

Singularity Recipe for Tofu2

Toolkit and pipeline for processing short- and long-read RNA sequencing data.

a long read repeat coverage calculator,given an long read file before assembly either direct from the sequencing runs or after the cleaning, it calculates the total amount of the repeat stretches present in the sequencing reads and you can plot them before assembly

Hormiphora californensis genome annotation and supplemental materials related to the genome assembly.

A simple test report for isoSeq3 of PacificBiosciences

Elloreas, a genome assembler

Inter-sample analysis of SQANTI classifications

A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

Snakemake workflow for SM-PATseq

Retro-ingineering of PacBio's modelling of IPD (RSII, Sequel I, Sequel II v2)

TNTurnerLab Code for Revio Neuro-2a paper

A simple regular expression based method for measuring telomere length from long-read sequencing

A phase-aware pharmacogenomic diplotyper for PacBio datasets

a conda yaml for the genomehifi-contiguity that will allow you to create the environment for all the analysis.