nextstrain
Here are 25 public repositories matching this topic...
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
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Jun 5, 2024 - Rust
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Jun 5, 2024 - Python
Nextstrain build for novel coronavirus SARS-CoV-2
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Jun 3, 2024 - Python
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
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May 30, 2024 - Python
Nextstrain build for mpox virus
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Jun 5, 2024 - Python
SARS-CoV-2 variant growth rates and frequency forecasts
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Jun 5, 2024 - Python
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
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May 2, 2024 - Python
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
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May 1, 2024 - Python
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
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Apr 22, 2024 - JavaScript
Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.
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Mar 19, 2024 - Nextflow
Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.
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Feb 17, 2024 - Python
Spike-only SARS-CoV-2 Nextstrain build
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Dec 13, 2023 - Python
BA.2.86 project with Sigal lab
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Nov 8, 2023 - Python
VariantHunter is a tool for fast detection of emerging SARS-CoV-2 variants. It's an highly flexible and user friendly application for the systematic monitoring of the evolution of SARS-CoV-2 both at global and regional level.
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Apr 23, 2023 - Vue
interactive maximum-likelihood phylogenies for SARS-CoV-2 genomes and variants of concern from Bangladesh
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Jun 22, 2022
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